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Ribotools 2.0.0 documentation
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Ribotools 2.0.0 documentation
  • Getting started
  • Installation
  • User guide
    • How to add a config file
    • How to prepare annotations
    • How to estimate abundance
    • How to estimate TE
    • How to estimate DE
    • How to use Ribo-seq ORFs
    • Default parameters
  • Tutorials
    • Run the TE pipeline
  • Frequently asked questions
  • API
    • run-htseq-workflow
    • get-gtf-from-predictions
    • get-sample-table
    • run-tea
    • run-dea
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  • run-htseq-workflow
  • get-gtf-from-predictions
  • get-sample-table
  • run-tea
  • run-dea
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